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dc.contributor.author | Domínguez, Martha C. | - |
dc.contributor.author | Alzate, Lina A. | - |
dc.contributor.author | Garcia Vallejo, Felipe | - |
dc.date.accessioned | 2021-10-15T19:37:06Z | - |
dc.date.available | 2021-10-15T19:37:06Z | - |
dc.date.issued | 2015-06-24 | - |
dc.identifier.uri | https://repositorio.accefyn.org.co/handle/001/857 | - |
dc.description.abstract | La selección de los sitios de integración del ADN retroviral en el genoma es crucial para moldear la dinámica de la infección. El objetivo de este estudio fue analizar la combinación específica de las características genómicas de la célula infectada que condicionarían la integración simultánea de ambos retrovirus. A partir de 203 secuencias de ADN humano vecinas a las repeticiones terminales largas (long terminal repeat, LTR) de ambos virus, depositadas en el GenBank, y mediante distintas herramientas computacionales, se hizo una simulación bioinformática para determinar la integración del VIH y el -HTLV-1 en una extensión de 100 kb, así como la localización cromosómica del provirus, el número de genes, su proceso molecular y función asociada, las islas CpG, las secuencias Alu y los elementos nucleares dispersos largos (long interspersed nuclear element, LINE), y su expresión en poblaciones de linfocitos de los genes blanco de la integración. El 47,3 % de las integraciones de ambos virus se localizó en regiones ricas en elementos repetidos. La integración en los genes de la clase II ocurrió en los intrones (p<0,05). Se observó una distribución cromosómica diferencial de ambos provirus en la que el HTLV-1 se localizó en regiones pericentroméricas y centroméricas, mientras que el VIH-1 lo hizo en zonas teloméricas y subteloméricas (p<0,001). El ambiente común para la integración de los linfocitos en el genoma estuvo conformado por genes codificantes de proteínas de unión a moléculas y de transducción de señales, así como por un elevado número de islas CpG y de repeticiones Alu. A partir de la simulación bioinformática de la integración entre el VIH-1 y el HTLV-1, se aportó evidencia que sustenta la hipótesis de que una combinación específica de variables genómicas condicionaría el proceso de integración diferencial simultánea de ambos retrovirus. Palabras clave: retrovirus, integración viral, linfocitos, islas de CpG, genes clase II, simulación por computador. | spa |
dc.description.abstract | The selection of retroviral cDNA integration sites in the human genome is a critical step to condition the dynamics of infection. The objective was to analyze the combination of genomic characteristics of infected cells that would condition the genomic profiles of HIV-1/HTLV-1 simultaneous integration. We carried out a computer simulation using 203 human genome sequences flanking 3´LTR of both retroviruses previously deposited in the GenBank, and applying several computational tools. The analyses were focused on determining the chromosomal integration, CpG islands, Alu sequences and the expression of integration target class II genes in lymphocytic populations in a 100 kb chromatin structure associated with simultaneous integration. We found 47.3% of simultaneous cDNA integrations localized in regions rich in repetitive elements. The rest of retroviral cDNA integrations occurred in class II gene introns (p<0.05). We determined a differential chromosomal distribution for both types of provirus where HTLV-1 provirus were preferentially placed in pericentromeric and centromeric regions in contrast with HIV-1 distribution, which was registered in telomeric and subtelomeric zones (p<0.001). The genomic environment of integration for both retroviruses was characterized by genes encoding molecular binding and signal transduction, as well as by high density of CpG islands and Alu sequences. The data resulting from the computer simulation did support the hypothesis that a combination of specific chromatin characteristics would determine the dynamics of HIV-1/HTLV-1 simultaneous integration process. | eng |
dc.format.extent | 11 páginas | spa |
dc.format.mimetype | application/pdf | spa |
dc.language.iso | spa | spa |
dc.publisher | Academia Colombiana de Ciencias Exactas, Físicas y Naturales | spa |
dc.rights | Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International | spa |
dc.rights.uri | https://creativecommons.org/licenses/by-nc/4.0/ | spa |
dc.title | Caracterización genómica de la integración simultánea del virus de la inmunodeficiencia humana 1 y el virus linfotrópico humano tipo1 | spa |
dc.type | Artículo de revista | spa |
dcterms.audience | Estudiantes, Profesores, Comunidad científica | spa |
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dc.rights.accessrights | info:eu-repo/semantics/openAccess | spa |
dc.type.driver | info:eu-repo/semantics/article | spa |
dc.type.version | info:eu-repo/semantics/publishedVersion | spa |
dc.rights.creativecommons | Atribución-NoComercial 4.0 Internacional (CC BY-NC 4.0) | spa |
dc.identifier.doi | https://doi.org/10.18257/raccefyn.183 | - |
dc.subject.proposal | Retrovirus | spa |
dc.subject.proposal | Retrovirus | eng |
dc.subject.proposal | Integración viral | spa |
dc.subject.proposal | Provirus integration | eng |
dc.subject.proposal | Linfocitos | spa |
dc.subject.proposal | Lymphocytes | eng |
dc.subject.proposal | Islas de CpG | spa |
dc.subject.proposal | CpG island | eng |
dc.subject.proposal | Genes clase II | spa |
dc.subject.proposal | Class II genes | eng |
dc.subject.proposal | Simulación por computador | spa |
dc.subject.proposal | Computer simulation | eng |
dc.type.coar | http://purl.org/coar/resource_type/c_6501 | spa |
dc.relation.ispartofjournal | Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales | spa |
dc.relation.citationvolume | 39 | spa |
dc.relation.citationstartpage | 239 | spa |
dc.relation.citationendpage | 249 | spa |
dc.publisher.place | Bogotá, Colombia | spa |
dc.contributor.corporatename | Academia Colombiana de Ciencias Exactas, Físicas y Naturales | spa |
dc.relation.citationissue | 151 | spa |
dc.type.content | DataPaper | spa |
dc.type.redcol | http://purl.org/redcol/resource_type/ARTREF | spa |
oaire.accessrights | http://purl.org/coar/access_right/c_abf2 | spa |
oaire.version | http://purl.org/coar/version/c_970fb48d4fbd8a85 | spa |
Appears in Collections: | BA. Revista de la Academia Colombiana de Ciencias Exactas Físicas y Naturales |
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